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package

bedtools

Description

Powerful toolset for genome arithmetic.

Metadata

Version

2.31.1

License

GPL-2.0

Status

BrokenNo
InsecureNo
UnfreeNo
UnsupportedNo

Source

pkgs/by-name/be/bedtools/package.nix:40

Homepage

https://bedtools.readthedocs.io/en/latest/

Maintainers (1)

Executables (38)

Show all
  • bin/shuffleBed
  • bin/bedToIgv
  • bin/bamToFastq
  • bin/closestBed
  • bin/windowMaker
  • bin/coverageBed
  • bin/intersectBed
  • bin/bed12ToBed6
  • bin/annotateBed
  • bin/bamToBed
  • bin/slopBed
  • bin/mapBed
  • bin/randomBed
  • bin/expandCols
  • bin/clusterBed
  • bin/subtractBed
  • bin/unionBedGraphs
  • bin/multiBamCov
  • bin/fastaFromBed
  • bin/sortBed
  • bin/tagBam
  • bin/complementBed
  • bin/maskFastaFromBed
  • bin/genomeCoverageBed
  • bin/getOverlap
  • bin/mergeBed
  • bin/flankBed
  • bin/shiftBed
  • bin/bedToBam
  • bin/bedtools
  • bin/pairToPair
  • bin/windowBed
  • bin/bedpeToBam
  • bin/groupBy
  • bin/pairToBed
  • bin/multiIntersectBed
  • bin/nucBed
  • bin/linksBed

Platforms (44)

    Darwin
    FreeBSD
    Linux
    NetBSD
    OpenBSD
    Redox
    Solaris
    Windows
Show all
  • aarch64-darwin
  • aarch64-freebsd
  • aarch64-linux
  • aarch64-netbsd
  • armv5tel-linux
  • armv6l-linux
  • armv6l-netbsd
  • armv7a-linux
  • armv7a-netbsd
  • armv7l-linux
  • armv7l-netbsd
  • i686-cygwin
  • i686-freebsd
  • i686-linux
  • i686-netbsd
  • i686-openbsd
  • loongarch64-linux
  • m68k-linux
  • m68k-netbsd
  • microblaze-linux
  • microblazeel-linux
  • mips-linux
  • mips64-linux
  • mips64el-linux
  • mipsel-linux
  • mipsel-netbsd
  • powerpc-linux
  • powerpc-netbsd
  • powerpc64-linux
  • powerpc64le-linux
  • riscv32-linux
  • riscv32-netbsd
  • riscv64-linux
  • riscv64-netbsd
  • s390-linux
  • s390x-linux
  • x86_64-cygwin
  • x86_64-darwin
  • x86_64-freebsd
  • x86_64-linux
  • x86_64-netbsd
  • x86_64-openbsd
  • x86_64-redox
  • x86_64-solaris