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emboss

Description

The European Molecular Biology Open Software Suite.

EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community, including libraries. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web.

Metadata

Version

6.6.0

License

GPL-2.0

Status

BrokenNo
InsecureNo
UnfreeNo
UnsupportedNo

Source

pkgs/applications/science/biology/emboss/default.nix:21

Homepage

https://emboss.sourceforge.net/

Executables (262)

Show all
  • bin/aaindexextract
  • bin/abiview
  • bin/acdc
  • bin/acdgalaxy
  • bin/acdlog
  • bin/acdpretty
  • bin/acdtable
  • bin/acdtrace
  • bin/acdvalid
  • bin/aligncopy
  • bin/aligncopypair
  • bin/antigenic
  • bin/assemblyget
  • bin/backtranambig
  • bin/backtranseq
  • bin/banana
  • bin/biosed
  • bin/btwisted
  • bin/cachedas
  • bin/cachedbfetch
  • bin/cacheebeyesearch
  • bin/cacheensembl
  • bin/cai
  • bin/chaos
  • bin/charge
  • bin/checktrans
  • bin/chips
  • bin/cirdna
  • bin/codcmp
  • bin/codcopy
  • bin/coderet
  • bin/compseq
  • bin/cons
  • bin/consambig
  • bin/cpgplot
  • bin/cpgreport
  • bin/cusp
  • bin/cutgextract
  • bin/cutseq
  • bin/dan
  • bin/dbiblast
  • bin/dbifasta
  • bin/dbiflat
  • bin/dbigcg
  • bin/dbtell
  • bin/dbxcompress
  • bin/dbxedam
  • bin/dbxfasta
  • bin/dbxflat
  • bin/dbxgcg
  • bin/dbxobo
  • bin/dbxreport
  • bin/dbxresource
  • bin/dbxstat
  • bin/dbxtax
  • bin/dbxuncompress
  • bin/degapseq
  • bin/density
  • bin/descseq
  • bin/diffseq
  • bin/distmat
  • bin/dotmatcher
  • bin/dotpath
  • bin/dottup
  • bin/dreg
  • bin/drfinddata
  • bin/drfindformat
  • bin/drfindid
  • bin/drfindresource
  • bin/drget
  • bin/drtext
  • bin/edamdef
  • bin/edamhasinput
  • bin/edamhasoutput
  • bin/edamisformat
  • bin/edamisid
  • bin/edamname
  • bin/edialign
  • bin/einverted
  • bin/embossdata
  • bin/embossupdate
  • bin/embossversion
  • bin/emma
  • bin/emowse
  • bin/entret
  • bin/epestfind
  • bin/eprimer3
  • bin/eprimer32
  • bin/equicktandem
  • bin/est2genome
  • bin/etandem
  • bin/extractalign
  • bin/extractfeat
  • bin/extractseq
  • bin/featcopy
  • bin/featmerge
  • bin/featreport
  • bin/feattext
  • bin/findkm
  • bin/freak
  • bin/fuzznuc
  • bin/fuzzpro
  • bin/fuzztran
  • bin/garnier
  • bin/geecee
  • bin/getorf
  • bin/godef
  • bin/goname
  • bin/helixturnhelix
  • bin/hmoment
  • bin/iep
  • bin/infoalign
  • bin/infoassembly
  • bin/infobase
  • bin/inforesidue
  • bin/infoseq
  • bin/isochore
  • bin/jaspextract
  • bin/jaspscan
  • bin/jembossctl
  • bin/lindna
  • bin/listor
  • bin/makenucseq
  • bin/makeprotseq
  • bin/marscan
  • bin/maskambignuc
  • bin/maskambigprot
  • bin/maskfeat
  • bin/maskseq
  • bin/matcher
  • bin/megamerger
  • bin/merger
  • bin/msbar
  • bin/mwcontam
  • bin/mwfilter
  • bin/needle
  • bin/needleall
  • bin/newcpgreport
  • bin/newcpgseek
  • bin/newseq
  • bin/nohtml
  • bin/noreturn
  • bin/nospace
  • bin/notab
  • bin/notseq
  • bin/nthseq
  • bin/nthseqset
  • bin/octanol
  • bin/oddcomp
  • bin/ontocount
  • bin/ontoget
  • bin/ontogetcommon
  • bin/ontogetdown
  • bin/ontogetobsolete
  • bin/ontogetroot
  • bin/ontogetsibs
  • bin/ontogetup
  • bin/ontoisobsolete
  • bin/ontotext
  • bin/palindrome
  • bin/pasteseq
  • bin/patmatdb
  • bin/patmatmotifs
  • bin/pepcoil
  • bin/pepdigest
  • bin/pepinfo
  • bin/pepnet
  • bin/pepstats
  • bin/pepwheel
  • bin/pepwindow
  • bin/pepwindowall
  • bin/plotcon
  • bin/plotorf
  • bin/polydot
  • bin/preg
  • bin/prettyplot
  • bin/prettyseq
  • bin/primersearch
  • bin/printsextract
  • bin/profit
  • bin/prophecy
  • bin/prophet
  • bin/prosextract
  • bin/pscan
  • bin/psiphi
  • bin/rebaseextract
  • bin/recoder
  • bin/redata
  • bin/refseqget
  • bin/remap
  • bin/restover
  • bin/restrict
  • bin/revseq
  • bin/runJemboss.sh
  • bin/seealso
  • bin/seqcount
  • bin/seqmatchall
  • bin/seqret
  • bin/seqretsetall
  • bin/seqretsplit
  • bin/seqxref
  • bin/seqxrefget
  • bin/servertell
  • bin/showalign
  • bin/showdb
  • bin/showfeat
  • bin/showorf
  • bin/showpep
  • bin/showseq
  • bin/showserver
  • bin/shuffleseq
  • bin/sigcleave
  • bin/silent
  • bin/sirna
  • bin/sixpack
  • bin/sizeseq
  • bin/skipredundant
  • bin/skipseq
  • bin/splitsource
  • bin/splitter
  • bin/stretcher
  • bin/stssearch
  • bin/supermatcher
  • bin/syco
  • bin/taxget
  • bin/taxgetdown
  • bin/taxgetrank
  • bin/taxgetspecies
  • bin/taxgetup
  • bin/tcode
  • bin/textget
  • bin/textsearch
  • bin/tfextract
  • bin/tfm
  • bin/tfscan
  • bin/tmap
  • bin/tranalign
  • bin/transeq
  • bin/trimest
  • bin/trimseq
  • bin/trimspace
  • bin/twofeat
  • bin/union
  • bin/urlget
  • bin/variationget
  • bin/vectorstrip
  • bin/water
  • bin/whichdb
  • bin/wobble
  • bin/wordcount
  • bin/wordfinder
  • bin/wordmatch
  • bin/wossdata
  • bin/wossinput
  • bin/wossname
  • bin/wossoperation
  • bin/wossoutput
  • bin/wossparam
  • bin/wosstopic
  • bin/xmlget
  • bin/xmltext
  • bin/yank