Comparison of trees and forests.

Wikipedia on forestry: "the science and craft of creating, managing, using, conserving, and repairing forests and associated resources."

This is a modest starting point and provides just:

• forest alignments

• tree alignments

Build this library and executable with GHC-8.0.2

To enable RNAforestry, use cabal new-build -frnaforestry or cabal new-configure -w compiler-path -frnaforestry && cabal new-build. We suggest using cabal with the nix-style local build options.

Forestry: Science and craft of forests

This library provides linear and affine tree alignment algorithms. In addition, a very simple program @RNAforestry@ is provided. This program mimics @RNAforester@.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
[email protected]
http://www.bioinf.uni-leipzig.de/~choener/