biostockholm

Parsing and rendering of Stockholm files (used by Pfam, Rfam and Infernal)

Parsing and rendering of files in Stockholm 1.0 format. Among the users of the Stockholm format are Pfam, Rfam and Infernal. These files hold information about families of proteins or non-coding RNAs. For more information, please see:

• http://sonnhammer.sbc.su.se/Stockholm.html

• ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/relnotes.txt

• http://en.wikipedia.org/wiki/Stockholm_format