A library for simulating epidemics as birth-death processes.

A library for simulating epidemics, with a focus on phylodynamics and observation models.

Although this package supports the definition of new models there are some that are implemented already in the Epidemic.Model module. Implemented models include:

1. Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see Epidemic.Model.BDSCOD)

2. Inhomogeneous Birth-Death-Sampling (see Epidemic.Model.InhomogeneousBDS)

3. Inhomogeneous BDSCOD (see Epidemic.Model.InhomogeneousBDSCOD)

4. Logistic Birth-Death-Sampling-Disaster (see Epidemic.Model.LogisticBDSD)

There are more details in the documentation of the Epidemic module.

epi-sim

A library for simulating stochastic epidemic models, with a focus on phylodynamics and observation models.

Epidemic events

A realisation of the model is represented by a list of EpidemicEvents which describe the events that occurred.

Available models

Although this package supports the definition of new models there are some that are implemented already in the Epidemic.Model module. Implemented models include:

1. Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see BDSCOD.hs)
2. Inhomogeneous Birth-Death-Sampling (see InhomogeneousBDS.hs)
3. Inhomogeneous Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see InhomogeneousBDSCOD.hs)
4. Logistic Birth-Death-Sampling-Disaster (see LogisticBDSD.hs)