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hisat2

Description

Graph based aligner.

Metadata

Version

2.2.1

License

GPL-3.0-or-later

Status

BrokenNo
InsecureNo
UnfreeNo
UnsupportedNo

Source

pkgs/by-name/hi/hisat2/package.nix:53

Homepage

https://daehwankimlab.github.io/hisat2/

Maintainers (1)

Executables (16)

Show all
  • bin/extract_exons.py
  • bin/extract_splice_sites.py
  • bin/hisat2
  • bin/hisat2-align-l
  • bin/hisat2-align-s
  • bin/hisat2-build
  • bin/hisat2-build-l
  • bin/hisat2-build-s
  • bin/hisat2-inspect
  • bin/hisat2-inspect-l
  • bin/hisat2-inspect-s
  • bin/hisat2_extract_exons.py
  • bin/hisat2_extract_snps_haplotypes_UCSC.py
  • bin/hisat2_extract_snps_haplotypes_VCF.py
  • bin/hisat2_extract_splice_sites.py
  • bin/hisat2_simulate_reads.py

Platforms (2)

    Linux
Show all
  • i686-linux
  • x86_64-linux