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python3.11-bx-python

Description

Tools for manipulating biological data, particularly multiple sequence alignments.

Metadata

Version

0.13.0

License

MIT

Status

BrokenNo
InsecureNo
UnfreeNo
UnsupportedNo

Source

pkgs/development/python-modules/bx-python/default.nix:65

Homepage

https://github.com/bxlab/bx-python

Maintainers (1)

Executables (94)

Show all
  • bin/aggregate_scores_in_intervals.py
  • bin/align_print_template.py
  • bin/axt_extract_ranges.py
  • bin/axt_to_fasta.py
  • bin/axt_to_lav.py
  • bin/axt_to_maf.py
  • bin/bed_bigwig_profile.py
  • bin/bed_build_windows.py
  • bin/bed_complement.py
  • bin/bed_count_by_interval.py
  • bin/bed_count_overlapping.py
  • bin/bed_coverage.py
  • bin/bed_coverage_by_interval.py
  • bin/bed_diff_basewise_summary.py
  • bin/bed_extend_to.py
  • bin/bed_intersect.py
  • bin/bed_intersect_basewise.py
  • bin/bed_merge_overlapping.py
  • bin/bed_rand_intersect.py
  • bin/bed_subtract_basewise.py
  • bin/bnMapper.py
  • bin/div_snp_table_chr.py
  • bin/find_in_sorted_file.py
  • bin/gene_fourfold_sites.py
  • bin/get_scores_in_intervals.py
  • bin/int_seqs_to_char_strings.py
  • bin/interval_count_intersections.py
  • bin/interval_join.py
  • bin/lav_to_axt.py
  • bin/lav_to_maf.py
  • bin/line_select.py
  • bin/lzop_build_offset_table.py
  • bin/mMK_bitset.py
  • bin/maf_build_index.py
  • bin/maf_chop.py
  • bin/maf_chunk.py
  • bin/maf_col_counts.py
  • bin/maf_col_counts_all.py
  • bin/maf_count.py
  • bin/maf_covered_ranges.py
  • bin/maf_covered_regions.py
  • bin/maf_div_sites.py
  • bin/maf_drop_overlapping.py
  • bin/maf_extract_chrom_ranges.py
  • bin/maf_extract_ranges.py
  • bin/maf_extract_ranges_indexed.py
  • bin/maf_filter.py
  • bin/maf_filter_max_wc.py
  • bin/maf_gap_frequency.py
  • bin/maf_gc_content.py
  • bin/maf_interval_alignibility.py
  • bin/maf_limit_to_species.py
  • bin/maf_mapping_word_frequency.py
  • bin/maf_mask_cpg.py
  • bin/maf_mean_length_ungapped_piece.py
  • bin/maf_percent_columns_matching.py
  • bin/maf_percent_identity.py
  • bin/maf_print_chroms.py
  • bin/maf_print_scores.py
  • bin/maf_randomize.py
  • bin/maf_region_coverage_by_src.py
  • bin/maf_select.py
  • bin/maf_shuffle_columns.py
  • bin/maf_species_in_all_files.py
  • bin/maf_split_by_src.py
  • bin/maf_thread_for_species.py
  • bin/maf_tile.py
  • bin/maf_tile_2.py
  • bin/maf_tile_2bit.py
  • bin/maf_to_axt.py
  • bin/maf_to_concat_fasta.py
  • bin/maf_to_fasta.py
  • bin/maf_to_int_seqs.py
  • bin/maf_translate_chars.py
  • bin/maf_truncate.py
  • bin/maf_word_frequency.py
  • bin/mask_quality.py
  • bin/nib_chrom_intervals_to_fasta.py
  • bin/nib_intervals_to_fasta.py
  • bin/nib_length.py
  • bin/one_field_per_line.py
  • bin/out_to_chain.py
  • bin/prefix_lines.py
  • bin/pretty_table.py
  • bin/qv_to_bqv.py
  • bin/random_lines.py
  • bin/table_add_column.py
  • bin/table_filter.py
  • bin/tfloc_summary.py
  • bin/ucsc_gene_table_to_intervals.py
  • bin/wiggle_to_array_tree.py
  • bin/wiggle_to_binned_array.py
  • bin/wiggle_to_chr_binned_array.py
  • bin/wiggle_to_simple.py

Platforms (1)

    Linux
Show all
  • x86_64-linux