Description
Calculate Chromosomal Instability Metrics.
Description
Implement various chromosomal instability metrics. 'CINmetrics' (Chromosomal INstability metrics) provides functions to calculate various chromosomal instability metrics on masked Copy Number Variation(CNV) data at individual sample level. The chromosomal instability metrics have been implemented as described in the following studies: Baumbusch LO et al. 2013 <doi:10.1371/journal.pone.0054356>, Davidson JM et al. 2014 <doi:10.1371/journal.pone.0079079>, Chin SF et al. 2007 <doi:10.1186/gb-2007-8-10-r215>.
README.md
CINmetrics
CINmetrics R package
The goal of CINmetrics package is to provide different methods of calculating Chromosomal Instability (CIN) metrics from the literature that can be applied to any cancer data set including The Cancer Genome Atlas.