Distance Metrics for Trees Generated by Congreve and Lamsdell.
CongreveLamsdell2016
This R package provides data and analyses that accompany the paper
- Smith, M. R. (2019), Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets, Biological Letters, 15:20180632, doi:10.1098/rsbl.2018.0632.
It incorporates data from:
Congreve, C. R., and J. C. Lamsdell. 2016. Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Palaeontology, 59:447–462. doi:10.1111/pala.12236.
Congreve, C. R., and J. C. Lamsdell. 2016. Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Dryad Digital Repository, doi:10.5061/dryad.7dq0j.
Some of these data are used in the Quartet package.
Equivalent data and analyses from data simulated by O'Reilly et al. (2016) are available at ms609.github.io/OReillyEtAl2016.
Installation
Install and load the library from CRAN as follows:
install.packages('CongreveLamsdell2016')
library('CongreveLamsdell2016')
Documentation
The package includes documentation and visualizations of its results: