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Description

Estimate Time Varying Reproduction Numbers from Epidemic Curves.

Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004) <doi:10.1093/aje/kwh255>.

EpiEstim

R build status Codecov test coverage DOI

A tool to estimate time varying instantaneous reproduction number during epidemics

This tool is described in the following paper:

A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics Anne Cori, Neil M. Ferguson, Christophe Fraser and Simon Cauchemez American Journal of Epidemiology 2013.

Metadata

Version

2.2-4

License

Unknown

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