Description
Estimate Time Varying Reproduction Numbers from Epidemic Curves.
Description
Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004) <doi:10.1093/aje/kwh255>.
README.md
EpiEstim
A tool to estimate time varying instantaneous reproduction number during epidemics
This tool is described in the following paper:
A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics Anne Cori, Neil M. Ferguson, Christophe Fraser and Simon Cauchemez American Journal of Epidemiology 2013.