Description

Compute Contributional Diversity Metrics.

Description

Compute alpha and beta contributional diversity metrics, which is intended for linking taxonomic and functional microbiome data. See 'GitHub' repository for the tutorial: <https://github.com/gavinmdouglas/FuncDiv/wiki>. Citation: Gavin M. Douglas, Sunu Kim, Morgan G. I. Langille, B. Jesse Shapiro (2023) <doi:10.1093/bioinformatics/btac809>.

README.md

cran.r-project.org

FuncDiv

FuncDiv is an R package for computing contributional diversity of joint taxa-function data.

It is described in this paper: Gavin M. Douglas, Sunu Kim, Morgan G. I. Langille, B. Jesse Shapiro. 2023. Efficient computation of contributional diversity metrics from microbiome data with FuncDiv. Bioinformatics 39 (1): btac809. DOI: 10.1093/bioinformatics/btac809

All feedback is appreciated! Please open an issue on this repository if you would like to ask a question or make a comment.

Please see our wiki site for the documentation.

Licensing note: This repository contains modified code (specifically in R/beta_workflow.R and src/rbiom_par_unifrac.cpp) from version 1.0.3 of the rbiom R package (link to original source code). The original code and FuncDiv are distributed under GNU Affero General Public Licenses.

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FuncDiv

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FuncDiv

Version

License

Status

Source

Homepage

Platforms75 (75)

Platforms (75)