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Description

Network Analysis for Omics Data.

Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.

MetaNet

R-CMD-check

MetaNet: Network analysis for multi-omics

The HTML documentation of the latest version is available at Github page.

TutorialšŸ“–

Please go to https://bookdown.org/Asa12138/metanet_book/ for the full vignette.

Installation

You can install the released version of MetaNet from CRAN with:

install.packages("MetaNet")

You can install the development version of MetaNet from GitHub with:

# install.packages("devtools")
devtools::install_github("Asa12138/MetaNet")

Workflow overview

Figure 1. Overview of the MetaNet workflow and its high-efficiency computation.

Figure 2. MetaNet supports flexible and intuitive network manipulation.

Figure 3. MetaNet enables diverse and powerful network layout strategies.

Figure 4. Diverse specialized network visualizations by MetaNet.

Citation

Please cite:

  1. Peng, C. et al.Ā MetaNet: a scalable and integrated tool for reproducible omics network analysis. 2025.06.26.661636 Preprint at https://doi.org/10.1101/2025.06.26.661636 (2025).

Need helps?

If you have questions/issues, please visit MetaNet homepage first. Your problems are mostly documented. If you think you found a bug, please post on github issue.

Metadata

Version

0.2.8

License

Unknown

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