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Description

Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit as Describe….

Extracts features from amplification curve data of quantitative Polymerase Chain Reactions (qPCR) according to Pabinger et al. 2014 <doi:10.1016/j.bdq.2014.08.002> for machine learning purposes. Helper functions prepare the amplification curve data for processing as functional data (e.g., Hausdorff distance) or enable the plotting of amplification curve classes (negative, ambiguous, positive). The hookreg() and hookregNL() functions of Burdukiewicz et al. (2018) <doi:10.1016/j.bdq.2018.08.001> can be used to predict amplification curves with an hook effect-like curvature. The pcrfit_single() function can be used to extract features from an amplification curve.

PCRedux

Quantitative PCR Machine Learning Toolkit

Installation

PCRedux is available on CRAN. However, you can install the latest development version of the code using the following code:

library("devtools")
install_github("PCRuniversum/PCRedux")

Manual

The manual is available online.

Metadata

Version

1.2-0

License

Unknown

Platforms (75)

    Darwin
    FreeBSD
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