Description
Single-Cell RNA-Seq Gene Expression Recovery.
Description
An implementation of a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. See Huang M, et al (2018) <doi:10.1038/s41592-018-0033-z> for more details.
README.md
SAVER 1.1.2
SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data.
Installation
You can install SAVER from CRAN by running:
install.packages("SAVER")
library(SAVER)
You can also install the most recent updates of SAVER from github with:
# install.packages("devtools")
devtools::install_github("mohuangx/SAVER")
Reference
For more information about the method, check out the website, tutorial, and paper.