Description
Knockoffs for Hidden Markov Models and Genetic Data.
Description
Generate knockoffs for genetic data and hidden Markov models. For more information, see the website below and the accompanying papers: "Gene hunting with hidden Markov model knockoffs", Sesia et al., Biometrika, 2019, (<doi:10.1093/biomet/asy033>). "Multi-resolution localization of causal variants across the genome", Sesia et al., bioRxiv, 2019, (<doi:10.1101/631390>).
README.md
SNPknock
This package provides efficient algorithms to generate knockoffs for hidden Markov models, with specific support for genetic data.
Installation
To install this package, run the following command in your R console:
# For the current development version
devtools::install_github("msesia/snpknock")