Description
Analogue and Weighted Averaging Methods for Palaeoecology.
Description
Fits Modern Analogue Technique and Weighted Averaging transfer function models for prediction of environmental data from species data, and related methods used in palaeoecology.
README.md
analogue
Released version
Build status
| Linux | Windows | Codecov |
|---|---|---|
 |  |
What is analogue?
analogue is an R package for use with palaeoecological data. Originally, analogue was intended as an R implementation of analogue methods such as analogue matching,
Features
- Transfer functions
- MAT
- Weighted Averaging with monotonic, inverse, and classical deshrinking, with and without tolerance down-weighting
- Principal Component Regression (using ecologically-relevant transformations)
- Cross-validation (Bootstrapping, leave-one-out, k-fold)
- Analogue statistics
- Analogue matching
- Dissimilarity coefficients
- Chord, Bray-Curtis, Gower's Generalised coefficient, Manhattan, ...
- Dissimilarity decisions thresholds
- Monte Carlo resampling
- Logistic regression
- Stratigraphic diagrams
- Principal curves
Bugs, feature requests
Bug reports and feature requests should be filed as issues.
Licence
analogue is released under the GNU General Public Licence Version 2.