Description
Cell Atlas Approximations.
Description
Provides an interface in R to cell atlas approximations. See the vignette under "Getting started" for instructions. You can also explore the reference documentation for specific functions. Additional interfaces and resources are available at <https://atlasapprox.readthedocs.io>.
README.md
R
The R interface can be used to access the atlas approximation API from R. It uses caching to speed up multiple requests so it is generally as fast or faster than using the REST API directly.
Requirements
You need the following R packages:
httr
Installation
You can install the package from CRAN (WIP!):
install.packages("atlasapprox")
Getting started
Load the library:
library("atlasapprox")
You now have access to the GetXXX functions within atlasapprox, e.g.:
human_organs <- GetOrgans(organism = "h_sapiens")
See the Reference page for details on each function.