Description
Work with 'BIDS' (Brain Imaging Data Structure) Projects.
Description
Tools for working with 'BIDS' (Brain Imaging Data Structure) formatted neuroimaging datasets. The package provides functionality for reading and querying 'BIDS'-compliant projects, creating mock 'BIDS' datasets for testing, and extracting preprocessed data from 'fMRIPrep' derivatives. It supports searching and filtering 'BIDS' files by various entities such as subject, session, task, and run to streamline neuroimaging data workflows. See Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44> for the 'BIDS' specification.
README.md
bidser
BIDS in R – (it’s a start!)
The goal of bidser is to make working with the BIDS neuroimaging format convenient in R. Currently there is support for MRI data and some support for some fmriprep derivatives.
Installation
Install the development version from GitHub with:
# install.packages("devtools")
devtools::install_github("bbuchsbaum/bidser")
Example
See https://bbuchsbaum.github.io/bidser/articles/quickstart.html
Albers theme
This package uses the albersdown theme. Existing vignette theme hooks are replaced so albers.css and local albers.js render consistently on CRAN and GitHub Pages. The palette family is provided via params$family (default 'red'). The pkgdown site uses template: { package: albersdown }.