Description
Trait Evolution on Phylogenies Using the Cauchy Process.
Description
The Cauchy Process can model pulsed continuous trait evolution on phylogenies. The likelihood is tractable, and is used for parameter inference and ancestral trait reconstruction. See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
README.md
cauphy
The Cauchy Process to model trait evolution on phylogenies.
Installation
Stable version on the CRAN
The development version can be installed from GitHub using the remotes package:
install.packages("remotes")
remotes::install_github(repo = "gilles-didier/cauphy", ref = "dev")
Documentation
See package documentation (references and vignettes) here: https://gilles-didier.github.io/cauphy/.
(Built with pkgdown).
Reference
Bastide, P. and Didier, G. (2023), The Cauchy Process on Phylogenies: a Tractable Model for Pulsed Evolution. Systematic Biology. doi:10.1093/sysbio/syad053. [bioRxiv].
Pronunciation
Pronounce cauphy like coffee, with a French accent: /ko.fi/.