Description
Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit.
Description
Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.
README.md
easybio
Installation and Usage
install.packages("easybio", repos = c("https://person-c.r-universe.dev", "https://cloud.r-project.org"))
To know how to use this package to do single cell annotation, see the article.
Stay up-to-date
To learn the difference between development version and CRAN version, see NEWS.
Citation
If you use the single-cell annotation functionality from easybio, consider citing: