Description
Graphical Modelling and Ordination using Copulas.
Description
Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) <doi:10.1016/j.jmva.2017.12.002>.
README.md
ecoCopula 
R package to find direct and indirect species associations from co-occurrence data
Installation
To install ecoCopula from CRAN:
install.packages("ecoCopula")
For the development version with the latest bells and whistles:
# install.packages("devtools")
devtools::install_github("gordy2x/ecoCopula")
For the development version with zero-inflated functionality:
# install.packages("devtools")
# devtools::install_github("r-forge/countreg/pkg")
devtools::install_github("gordy2x/ecoCopula", ref="e401671")
If you have trouble installing, please email me at [email protected].