Description
Genetic Association Analysis.
Description
It gathers information, meta-data and scripts in a two-part Henry-Stewart talk by Zhao (2009, <doi:10.69645/DCRY5578>), which showcases analysis in aspects such as testing of polymorphic variant(s) for Hardy-Weinberg equilibrium, association with trait using genetic and statistical models as well as Bayesian implementation, power calculation in study design and genetic annotation. It also covers R integration with the Linux environment, GitHub, package creation and web applications.
README.md
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Genetic Association Analysis
It gathers information, meta-data and scripts in a two-part Henry-Stewart talk by Zhao (2009, doi:10.69645/DCRY5578), which showcases analysis in aspects such as testing of polymorphic variant(s) for Hardy-Weinberg equilibrium, association with trait using genetic and statistical models as well as Bayesian implementation, power calculation in study design and genetic annotation. It also covers R integration with the Linux environment, GitHub, package creation and web applications.
Installation
The latest version of gaawr2 can be installed as usual:
1. Install from R
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("jinghuazhao/gaawr2")
2. Install from GitHub repository
git clone https://github.com/jinghuazhao/gaawr2
R CMD INSTALL gaawr2
Dependencies are detailed in the DECRIPTION file of the package at GitHub.
A summary of functions
This can be seen from R with
library(help=gaawr2)
or
library(gaawr2)
?gaawr2