Description
Processing 'Gen5' 2.06 Exported Data.
Description
A collection of functions for processing 'Gen5' 2.06 exported data. 'Gen5' is an essential data analysis software for BioTek plate readers <https://www.biotek.com/products/software-robotics-software/gen5-microplate-reader-and-imager-software/>. This package contains functions for data cleaning, modeling and plotting using exported data from 'Gen5' version 2.06. It exports technically correct data defined in (Edwin de Jonge and Mark van der Loo (2013) <https://cran.r-project.org/doc/contrib/de_Jonge+van_der_Loo-Introduction_to_data_cleaning_with_R.pdf>) for customized analysis. It contains Boltzmann fitting for general kinetic analysis. See <https://www.github.com/yanxianUCSB/gen5helper> for more information, documentation and examples.
README.md
gen5helper
A Collection of Functions for Processing Gen5 2.06 Exported Data
Installation
You can install gen5helper from github with:
# install.packages("devtools")
devtools::install_github("yanxianucsb/gen5helper")
Example
After exporting tab-delim ascii files (named 'data.txt' for instance), this is a basic example for further cleaning and annotating:
## clean
df <- g5h.clean('data.txt')
## add time intervals
df <- g5h.set_time(df)
## add mean, standard deviation, treatment and dose.
df <- g5h.annotate(df)