Description
Compute, Handle and Plot Incidence of Dated Events.
Description
Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org>).
README.md
incidence2
incidence2 is an R package that implements functions and classes to compute, handle and visualise incidence from linelist data. It refocusses the scope of the original incidence package. Unlike the original package, incidence2 concentrates only on the initial calculation, manipulation and plotting of the resultant incidence objects.
Installing the package
You can install the released version of incidence2 from CRAN with:
install.packages("incidence2")
Vignettes
An overview of incidence2 is provided in the vignette distributed with the package:
vignette("incidence2", package = "incidence2")