Description
Le-Huynh Truc-Ly's R Code and Templates.
Description
Miscellaneous R functions (for graphics, data import, data transformation, and general utilities) and templates (for exploratory analysis, Bayesian modeling, and crafting scientific manuscripts).
README.md
lehuynh
Le-Huynh Truc-Ly’s R Code and Templates
lehuynh
is an R package comprising a collection of miscellaneous R functions and templates that I find particularly useful.
This package includes:
- Functions for graphics, data importation, data transformation, and general utilities.
- Templates for Exploratory Analysis, Bayesian modeling, and crafting scientific manuscripts.
Installation
lehuynh
R package can be installed from GitHub with:
if(!requireNamespace("devtools", quietly = TRUE)) {
install.packages("devtools")
}
devtools::install_github("le-huynh/lehuynh")
This package is also accessible for download via Zenodo with the DOI 10.5281/zenodo.10421410.
Functions
ggsave_elsevier( )
: Save a plot usingggplot2::ggsave( )
. Plot size follows instructions of Elsevier journals.import_data( )
: Imports multiple data files of the same format from a specified directory. The output is a named list of imported objects.import_excel( )
: Imports an Excel file with multiple sheets and returns a named list of imported sheets.lehuynh_theme( )
: Personal ggplot2 theme (white background, black axis, black text, etc.).MinMaxScaling( )
: Min-max normalization (min = 0, max = 1).new_project( )
: Create a project for reproducible purpose.ppc_brms( )
: Plot fitted versus observed values for brmsfit Objects.tidytuesday( )
: Create a new folder for #tidytuesday challenge.tsi( )
: Calculate TSI (Trophic state index) (Carlson, 1977).
Templates
draft_elsevier
: Creating an Rmarkdown manuscript for Elsevier journals (example).lehuynh_Bayes_brms
: Basic steps to fit, check, and interpret a Bayesian model viabrms
package.lehuynh_EA
: Basic steps to do Exploratory Analysis.