Description
Viral Quasispecies Comparison from Long-Read Sequencing Data.
Description
Performs variety of viral quasispecies diversity analyses [see Gregori et al. (2016) <doi:10.1016/j.virol.2016.03.017>] based on long-read sequence alignment. Main functions include 1) sequencing error minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.
README.md
longreadvqs 
Tool kits for Viral Quasispecies Comparison from Long-Read Sequencing performing variety of viral quasispecies diversity analyses based on long-read sequence alignment. Main functions include 1) sequencing error minimization and read sampling, 2) SNV profiles comparison, and 3) viral quasispecies profiles comparison and visualization.