Description
Resolution-Optimised SNPs.
Description
This is a R implementation of "Minimum SNPs" software as described in "Price E.P., Inman-Bamber, J., Thiruvenkataswamy, V., Huygens, F and Giffard, P.M." (2007) <doi:10.1186/1471-2105-8-278> "Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants."
README.md
minSNPs Package
For manual, see here.
This is a rebuilt version of minSNPs. Its functionality is similar to the original repository, but has cleaner code and less dependencies.
The package has a dependency that is not in CRAN, but in BioC. In order for R to install that, you need to enable BioC repository, this can be done by running setRepositories() and selecting both CRAN & BioC Software.
This is a simple install script for R packages:
if (!require("minSNPs", quietly = TRUE)){
if (!require("BiocParallel", quietly = TRUE)){
if (!require("BiocManager", quietly = TRUE)){
install.packages("BiocManager")
}
BiocManager::install("BiocParallel")
}
install.packages("minSNPs")
}
See standard workflow or standard workflow in Google colab for quick start.