Description
Genetics and Independence Testing of Mixed Genetic Panels.
Description
Developed to deal with multi-locus genotype data, this package is especially designed for those panel which include different type of markers. Basic genetic parameters like allele frequency, genotype frequency, heterozygosity and Hardy-Weinberg test of mixed genetic data can be obtained. In addition, a new test for mutual independence which is compatible for mixed genetic data is developed in this package.
README.md
mixIndependR
The goal of mixIndependR is to test the mutual independence of mixed genetic markers.
Installation
You can install the released version of mixIndependR from CRAN with:
install.packages("mixIndependR")
Example
The dataset imported can be genotype data with sample ID in each row and the marker name in each column.Excel, csv, and vcf files are compatible.
library(mixIndependR)