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Description

Genetics and Independence Testing of Mixed Genetic Panels.

Developed to deal with multi-locus genotype data, this package is especially designed for those panel which include different type of markers. Basic genetic parameters like allele frequency, genotype frequency, heterozygosity and Hardy-Weinberg test of mixed genetic data can be obtained. In addition, a new test for mutual independence which is compatible for mixed genetic data is developed in this package.

mixIndependR

The goal of mixIndependR is to test the mutual independence of mixed genetic markers.

Installation

You can install the released version of mixIndependR from CRAN with:

install.packages("mixIndependR")

Example

The dataset imported can be genotype data with sample ID in each row and the marker name in each column.Excel, csv, and vcf files are compatible.

library(mixIndependR)
Metadata

Version

1.0.0

License

Unknown

Platforms (75)

    Darwin
    FreeBSD
    Genode
    GHCJS
    Linux
    MMIXware
    NetBSD
    none
    OpenBSD
    Redox
    Solaris
    WASI
    Windows
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