Description
A Functional Data Analysis Package for Spatial Single Cell Data.
Description
Methods and tools for deriving spatial summary functions from single-cell imaging data and performing functional data analyses. Functions can be applied to other single-cell technologies such as spatial transcriptomics. Functional regression and functional principal component analysis methods are in the 'refund' package <https://cran.r-project.org/package=refund> while calculation of the spatial summary functions are from the 'spatstat' package <https://spatstat.org/>.
README.md
mxFDA 
mxFDA
A functional data analysis package for spatial point pattern data.
Installing mxFDA to R
To install, the devtools or remotes package is required for the install_github() function:
#install devtools if not available
if (!require("devtools", quietly = TRUE))
install.packages("devtools")
#install from github
devtools::install_github("julia-wrobel/mxfda")
To install a specific release of mxfda, use the devtools syntax. This is an example for installing the first release of mxfda:
devtools::install_github('julia-wrobel/[email protected]')
Vignettes and Function References
If interested in documentation and how-to's, please see http://juliawrobel.com/mxfda/
GitHub Code
The raw code can be found on the GitHub page by clicking the GitHub symbol in the upper right of the pkgdown site or at https://github.com/julia-wrobel/mxfda.