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Description

Bayesian Ordinal Regression for High-Dimensional Data.

Provides a function for fitting various penalized Bayesian cumulative link ordinal response models when the number of parameters exceeds the sample size. These models have been described in Zhang and Archer (2021) <doi:10.1186/s12859-021-04432-w>.

ordinalbayes

Installing ordinalbayes

  1. Install JAGS https://mcmc-jags.sourceforge.io
  2. Install R https://cran.r-project.org
  3. Install runjags which is hosted on CRAN and http://runjags.sourceforge.net
  4. Install Bioconductor packages a. See https://www.bioconductor.org/install/ to install base Bioconductor packages b. To run examples using finalSet and reducedSet the DESeq2 package is needed. To install run

    BiocManager::install("DESeq2")

  5. Install ordinalbayes using a. within R use > install.packages("ordinalbayes") or b. > devtools::install_github("kelliejarcher/ordinalbayes", build_vignettes = TRUE) This latter command takes longer because the vignette needs to be built.
Metadata

Version

0.1.1

License

Unknown

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