Description
Bayesian Ordinal Regression for High-Dimensional Data.
Description
Provides a function for fitting various penalized Bayesian cumulative link ordinal response models when the number of parameters exceeds the sample size. These models have been described in Zhang and Archer (2021) <doi:10.1186/s12859-021-04432-w>.
README.md
ordinalbayes
Installing ordinalbayes
- Install JAGS https://mcmc-jags.sourceforge.io
- Install R https://cran.r-project.org
- Install runjags which is hosted on CRAN and http://runjags.sourceforge.net
- Install Bioconductor packages a. See https://www.bioconductor.org/install/ to install base Bioconductor packages b. To run examples using finalSet and reducedSet the DESeq2 package is needed. To install run
BiocManager::install("DESeq2")
- Install ordinalbayes using a. within R use > install.packages("ordinalbayes") or b. > devtools::install_github("kelliejarcher/ordinalbayes", build_vignettes = TRUE) This latter command takes longer because the vignette needs to be built.