Description
A Collection of Proteome Panels and Metadata.
Description
It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>). The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>) and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from 'CellCarta' (<https://cellcarta.com/>), 'Seer' (<https://seer.bio/>) and 'SWATH-MS' (<doi:10.15252/msb.20178126>). The metadata encompasses updated annotations and publication details.
README.md
A Collection of Proteome Panels and Metadata
It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/) and 'SomaScan' (as well as mass spectrometry-based panels from 'CellCarta' (<https://cellcarta.com/), 'Seer' (and 'SWATH-MS' (<doi:10.15252/msb.20178126). The metadata encompasses updated annotations and publication details.
Installation
1. Install from R
# CRAN
install.packages("pQTLdata")
# GitHub
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("jinghuazhao/pQTLdata")
2. Install from GitHub repository
git clone https://github.com/jinghuazhao/pQTLdata
R CMD INSTALL pQTLdata
3. Install from zip file
wget https://github.com/jinghuazhao/pQTLdata/archive/refs/heads/main.zip
unzip main
A summary of datasets
library(help=pQTLdata)
help(pQTLdata)