Inference and Prediction of ToxicoKinetic (TK) Models.
rbioacc
Inference and Prediction of ToxicoKinetic (TK) Models
Little hack
To load all internal function of a package during dev: devtools::load_all()
A lighter package build
To make the package lighter, we have to remove the vignettes: see file .Rbuildignore
Error to recompile during package development
Sometimes, there is an Error to recompile during development after change of .stan files. A solution is to remove the rbioacc folder in R repository of the win-library (see the path written in the error message).
An other solution is to build the package from the terminal using R CMD -preclean INSTALL rbioacc from parent directory of rbioacc.
Note
- S3 Object System: https://adv-r.had.co.nz/S3.html
- Google's R Style Guide: https://google.github.io/styleguide/Rguide.html
- testthat: https://github.com/r-lib/testthat
- covr: https://github.com/r-lib/covr
- to add a package
xxr:usethis::use_package("xxr") - to add data set
datar:usethis::use_data(datar)
Build
pkgbuild::compile_dll() # to preform a fake R CMD install
roxygen2::roxygenize() # to update the documentation
devtools::install()
Test and Check the package
devtools::test()
devtools::check()
then to build the package:
devtools::build()
If the archive produce (rPBK_X.Y.Z.tar.gz) is in the workspace of the container (outside RPBK), then move the archive:
mv rPBK_X.Y.Z.tar.gz rPBK
Check as CRAN
R CMD check --as-cran
or from command line, but not working very well to be send to CRAN:
R CMD INSTALL --preclean --no-configure --build .
R CMD INSTALL --preclean --build .