Description
Miscellaneous Tools for Sequence Analysis.
Description
It provides miscellaneous sequence analysis functions for describing episodes in individual sequences, measuring association between domains in multidimensional sequence analysis (see Piccarreta (2017) <doi:10.1177/0049124115591013>), heat maps of sequence data, Globally Interdependent Multidimensional Sequence Analysis (see Robette et al (2015) <doi:10.1177/0081175015570976>), smoothing sequences for index plots (see Piccarreta (2012) <doi:10.1177/0049124112452394>), coding sequences for Qualitative Harmonic Analysis (see Deville (1982)), measuring stress from multidimensional scaling factors (see Piccarreta and Lior (2010) <doi:10.1111/j.1467-985X.2009.00606.x>), symmetrical (or canonical) Partial Least Squares (see Bry (1996)).
README.md
seqhandbook
Miscellaneous Tools for Sequence Analysis
This R package complements the handbook on sequence analysis "L'analyse statistique des trajectoires" (see references).
It provides the datasets used in the examples in the handbook, as well as functions for :
- describing episodes in individual sequences (at least one episode, number of episodes, position of the start of the first episode)
- measuring association between domains in multidimensional sequence analysis
- heat maps of sequence data
- Globally Interdependent Multidimensional Sequence Analysis (GIMSA)
- smoothing sequences for index plots
- coding sequences for Qualitative Harmonic Analysis
- measuring stress from MDS factors
- symmetrical PLS
installation
Execute the following code within R:
if (!require(devtools)){
install.packages('devtools')
library(devtools)
}
install_github("nicolas-robette/seqhandbook")
References
Robette, Nicolas. L'analyse statistique des trajectoires : Typologies de séquences et autres approches. Nouvelle édition [en ligne]. Paris : Ined Éditions, 2021. Disponible sur Internet : https://books.openedition.org/ined/16670. ISBN : 9782733290507. DOI : https://doi.org/10.4000/books.ined.16670.