Description
Modeling Longitudinal Antibody Responses to Infection.
Description
Implements Bayesian hierarchical models for estimating antibody kinetic parameters from longitudinal serological data. Fits two-phase within-host models capturing antibody rise, peak, and decay following pathogen infection, using 'JAGS' for posterior inference. Designed as the upstream companion to the 'serocalculator' package for end-to-end seroepidemiological analysis. Methods are described in Teunis and colleagues (2016) <doi:10.1016/j.epidem.2016.04.001> and Teunis and van Eijkeren (2020) <doi:10.1002/sim.8578>.
README.md
{serodynamics}
The goal of {serodynamics} is to implement methods for modeling longitudinal antibody responses to infection.
Installation
Once accepted on CRAN, install the released version with:
install.packages("serodynamics")
Or install the development version from GitHub with:
# install.packages("pak")
pak::pak("UCD-SERG/serodynamics")