Description
Predict Presence of Signal Peptides.
Description
Predicts the presence of signal peptides in eukaryotic protein using hidden semi-Markov models. The implemented algorithm can be accessed from both the command line and GUI.
README.md
Predict Presence of Signal Peptides
signalHsmm predicts presence of signal peptides in eukaryotic proteins using hidden semi-Markov models. The implemented algorithm can be accessed as a web-based service http://smorfland.uni.wroc.pl/shiny/signalHsmm/.
Local instance of signalHsmm
signalHsmm can be also used locally as the R package. It can be installed from CRAN using:
install.packages("signalHsmm")
You can install the latest development version of the package directly from github:
source("https://install-github.me/michbur/signalHsmm")
After the installation, the GUI can be accessed locally:
library(signalHsmm)
gui_signalHsmm()
All signalHsmm functionalities can be also invoked in the batch mode, for example:
run_signalHsmm(benchmark_dat[1:10])