A Collection of Utility Function from the Inserm/Inria SISTM Team.

sistmr

sistmr is an R package, hosted on GitHub, containing functions common to the members of the SISTM members.

Philosophy

This package contains functions used by one or more team members. It makes it possible to gather in the same repository R codes useful to different members of the team and to host the latest version of these codes.

In practice

GitHub

To be able to contribute, you must:

• create an account on GitHub

• ask to be part of the SISTM “organization” : https://github.com/sistm

• clone git repository https://github.com/sistm/sistmr (for example, from Rstudio : New project > Version control > Git, advise the deposit address in “Repository URL” then “Create project”).

For more information on using Git and GitHub, see Chapter 2 of https://r-dev-perf.borishejblum.science.

R code

Once the access is configured, most of the contributions are in the R/ folder. The procedure and recommendations are as follows:

• THE RULE : one function = one *.R file !!!

• add an R file containing the R code of the function

• document the function using roxygen tags (for more details on the roxygen documentation, see section 1.3 of https://r-dev-perf.borishejblum.science), then generate the documentation (Rstudio : Build tab > More > Document, or run devtools::document()).

Consideration of changes and synchronization

The work is done locally, it must now be synchronized with the server :

• do a “commit”, explaining as much as possible what you have done

• do a “push” to upload your modifications to GitHub.

Thank you for your contribution to sistmr :-)