Description
Genotype by Environment (GxE) Analysis.
Description
Analysis of multi environment data of plant breeding experiments following the analyses described in Malosetti, Ribaut, and van Eeuwijk (2013), <doi:10.3389/fphys.2013.00044>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
README.md
statgenGxE
statgenGxE is an R package providing functions for Genotype by Environment (GxE) analysis for data of plant breeding experiments.
The following types of analysis can be done using statgenGxE:
- Mixed model analysis of GxE table of means
- Finlay-Wilkinson Analysis
- AMMI Analysis
- GGE Analysis
- Identifying mega environments
- Stability measures
- Modeling of heterogeneity of genetic variances and correlations
statgenGxE has extensive options for summarizing and visualizing the results of the analyses. For a full overview of all options it is best to read the vignette
Installation
- Install from CRAN:
install.packages("statgenGxE")
- Install latest development version from GitHub (requires remotes package):
remotes::install_github("Biometris/statgenGxE", ref = "develop", dependencies = TRUE)