Description
Calculation of IBD Probabilities.
Description
For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.
README.md
statgenIBD
statgenIBD is an R package for calculating IBD probabilities for biparental, three and four-way crosses. Calculations are based on Hidden Markov Models (HMM) and inheritance vectors.
Installation
- Install from CRAN:
install.packages("statgenIBD")
- Install latest development version from GitHub (requires remotes package):
remotes::install_github("Biometris/statgenIBD", ref = "develop", dependencies = TRUE)