Description
QTL Mapping for Multi Parent Populations.
Description
For Multi Parent Populations (MPP) Identity By Descend (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. (<doi:10.1007/s00122-021-03919-7>).
README.md
statgenMPP
The statgenMPP package is developed as an easy-to-use package for QTL mapping in multi-parent populations. The package has many ways of visualizing inputs and results. First Identity By Descent (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. 2021.
- Install from CRAN:
install.packages("statgenMPP")
- Install latest development version from GitHub (requires remotes package):
remotes::install_github("Biometris/statgenMPP", ref = "develop", dependencies = TRUE)