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package

sratoolkit

Description

Collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Metadata

Version

3.1.1

License

NCBI-PD

Status

BrokenNo
InsecureNo
UnfreeYes
UnsupportedNo

Source

pkgs/by-name/sr/sratoolkit/package.nix:49

Homepage

https://github.com/ncbi/sra-tools

Maintainers (2)

Executables (133)

Show all
  • bin/abi-dump
  • bin/abi-dump.2
  • bin/abi-dump.2.11.2
  • bin/abi-load
  • bin/abi-load.2
  • bin/abi-load.2.11.2
  • bin/align-info
  • bin/align-info.2
  • bin/align-info.2.11.2
  • bin/bam-load
  • bin/bam-load.2
  • bin/bam-load.2.11.2
  • bin/blastn_vdb
  • bin/blastn_vdb.2
  • bin/blastn_vdb.2.10.1-2.11.2
  • bin/cache-mgr
  • bin/cache-mgr.2
  • bin/cache-mgr.2.11.2
  • bin/cg-load
  • bin/cg-load.2
  • bin/cg-load.2.11.2
  • bin/dump-ref-fasta
  • bin/dump-ref-fasta.2
  • bin/dump-ref-fasta.2.11.2
  • bin/fasterq-dump
  • bin/fasterq-dump-orig.2.11.2
  • bin/fasterq-dump-orig.2.11.3
  • bin/fasterq-dump.2
  • bin/fasterq-dump.2.11.2
  • bin/fasterq-dump.2.11.3
  • bin/fastq-dump
  • bin/fastq-dump-orig.2.11.2
  • bin/fastq-dump.2
  • bin/fastq-dump.2.11.2
  • bin/fastq-load
  • bin/fastq-load.2
  • bin/fastq-load.2.11.2
  • bin/helicos-load
  • bin/helicos-load.2
  • bin/helicos-load.2.11.2
  • bin/illumina-dump
  • bin/illumina-dump.2
  • bin/illumina-dump.2.11.2
  • bin/illumina-load
  • bin/illumina-load.2
  • bin/illumina-load.2.11.2
  • bin/kar
  • bin/kar.2
  • bin/kar.2.11.2
  • bin/kdbmeta
  • bin/kdbmeta.2
  • bin/kdbmeta.2.11.2
  • bin/latf-load
  • bin/latf-load.2
  • bin/latf-load.2.11.2
  • bin/pacbio-load
  • bin/pacbio-load.2
  • bin/pacbio-load.2.11.2
  • bin/prefetch
  • bin/prefetch-orig.2.11.2
  • bin/prefetch.2
  • bin/prefetch.2.11.2
  • bin/rcexplain
  • bin/rcexplain.2
  • bin/rcexplain.2.11.2
  • bin/sam-dump
  • bin/sam-dump-orig.2.11.2
  • bin/sam-dump.2
  • bin/sam-dump.2.11.2
  • bin/sff-dump
  • bin/sff-dump.2
  • bin/sff-dump.2.11.2
  • bin/sff-load
  • bin/sff-load.2
  • bin/sff-load.2.11.2
  • bin/sra-blastn
  • bin/sra-pileup
  • bin/sra-pileup-orig.2.11.2
  • bin/sra-pileup.2
  • bin/sra-pileup.2.11.2
  • bin/sra-search
  • bin/sra-search.2
  • bin/sra-search.2.11.2
  • bin/sra-sort
  • bin/sra-sort-cg
  • bin/sra-sort-cg.2
  • bin/sra-sort-cg.2.11.2
  • bin/sra-sort.2
  • bin/sra-sort.2.11.2
  • bin/sra-stat
  • bin/sra-stat.2
  • bin/sra-stat.2.11.2
  • bin/sra-tblastn
  • bin/srapath
  • bin/srapath-orig.2.11.2
  • bin/srapath.2
  • bin/srapath.2.11.2
  • bin/sratools.2.11.2
  • bin/sratools.2.11.3
  • bin/srf-load
  • bin/srf-load.2
  • bin/srf-load.2.11.2
  • bin/tblastn_vdb
  • bin/tblastn_vdb.2
  • bin/tblastn_vdb.2.10.1-2.11.2
  • bin/test-sra
  • bin/test-sra.2
  • bin/test-sra.2.11.2
  • bin/vdb-config
  • bin/vdb-config.2
  • bin/vdb-config.2.11.2
  • bin/vdb-copy
  • bin/vdb-copy.2
  • bin/vdb-copy.2.11.2
  • bin/vdb-decrypt
  • bin/vdb-decrypt.2
  • bin/vdb-decrypt.2.11.2
  • bin/vdb-dump
  • bin/vdb-dump-orig.2.11.2
  • bin/vdb-dump.2
  • bin/vdb-dump.2.11.2
  • bin/vdb-encrypt
  • bin/vdb-encrypt.2
  • bin/vdb-encrypt.2.11.2
  • bin/vdb-lock
  • bin/vdb-lock.2
  • bin/vdb-lock.2.11.2
  • bin/vdb-unlock
  • bin/vdb-unlock.2
  • bin/vdb-unlock.2.11.2
  • bin/vdb-validate
  • bin/vdb-validate.2
  • bin/vdb-validate.2.11.2

Platforms (44)

    Darwin
    FreeBSD
    Linux
    NetBSD
    OpenBSD
    Redox
    Solaris
    Windows
Show all
  • aarch64-darwin
  • aarch64-linux
  • aarch64-netbsd
  • armv5tel-linux
  • armv6l-linux
  • armv6l-netbsd
  • armv7a-darwin
  • armv7a-linux
  • armv7a-netbsd
  • armv7l-linux
  • armv7l-netbsd
  • i686-cygwin
  • i686-darwin
  • i686-freebsd
  • i686-linux
  • i686-netbsd
  • i686-openbsd
  • loongarch64-linux
  • m68k-linux
  • m68k-netbsd
  • microblaze-linux
  • microblazeel-linux
  • mips-linux
  • mips64-linux
  • mips64el-linux
  • mipsel-linux
  • mipsel-netbsd
  • powerpc-netbsd
  • powerpc64-linux
  • powerpc64le-linux
  • riscv32-linux
  • riscv32-netbsd
  • riscv64-linux
  • riscv64-netbsd
  • s390-linux
  • s390x-linux
  • x86_64-cygwin
  • x86_64-darwin
  • x86_64-freebsd
  • x86_64-linux
  • x86_64-netbsd
  • x86_64-openbsd
  • x86_64-redox
  • x86_64-solaris