package

stacks

Description

Software pipeline for building loci from short-read sequences.

Metadata

Version

2.68

License

GPL-3.0-or-later

Status

Source

pkgs/by-name/st/stacks/package.nix:19

Homepage

http://catchenlab.life.illinois.edu/stacks/

Maintainers (1)

Bruno Bzeznik

Executables (19)

Show all

bin/clone_filter
bin/cstacks
bin/denovo_map.pl

bin/gstacks
bin/kmer_filter
bin/phasedstacks
bin/populations
bin/process_radtags
bin/process_shortreads
bin/ref_map.pl
bin/sstacks
bin/stacks-count-reads-per-sample-per-locus
bin/stacks-dist-extract
bin/stacks-gdb
bin/stacks-hist2d-loci-samples-coverage
bin/stacks-integrate-alignments
bin/stacks-samtools-tview
bin/tsv2bam
bin/ustacks

Platforms (22)

Linux

Show all

aarch64-linux
armv5tel-linux
armv6l-linux
armv7a-linux
armv7l-linux
i686-linux
loongarch64-linux
m68k-linux
microblaze-linux
microblazeel-linux
mips-linux
mips64-linux
mips64el-linux
mipsel-linux
powerpc-linux
powerpc64-linux
powerpc64le-linux
riscv32-linux
riscv64-linux
s390-linux
s390x-linux
x86_64-linux