development

Size-Constrained Clustering

Core Utilities for Single-Cell RNA-Seq

The Self-Consistent, Competing Risks (SC-CR) Algorithms

The Self-Controlled Case Series Method

Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Easily Access and Maintain Time-Based Versioned Data (Slowly-Changing-Dimension)

Estimating Dynamic Correlation

Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference

Shape-Constrained Kernel Density Estimation

Single-Cell Decomposition using Hierarchical Autoencoder

Estimating Hierarchical Linear Models for Single-Case Designs

Differential Analysis of Intercellular Communication from scRNA-Seq Data

Item-Wise Score-Based DIF Detection

Single Case Design Tools

Applying Partitioning Around Medoids to Single Cell Data with High Number of Cells

Splitting-Coalescence-Estimation Method

Switch Between Alternative 'shiny' UIs

Single Cell Entropy Analysis of Gene Heterogeneity in Cell Populations

Stellar CharactEristics Pisa Estimation gRid

Stellar CharactEristics Pisa Estimation gRid for Binary Systems

Access and Format Single-Cell RNA-Seq Datasets from Public Resources

Marker-Based Cell Type Purification for Single-Cell Sequencing Data

Supervised Component Generalized Linear Regression

Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq

Scalable Geographically Weighted Regression

Request Scheduler

Convert Images to Usable Color Schemes

Tools for 12-Tone Musical Composition

Analyse Citation Data from Google Scholar

Retrieve, Harmonise and Map Open Data Regarding the Italian School System

Functions and Datasets for Math Used in School

Tools for Analyzing Factorial Experiments

The Entire Transcript from the Office in Tidy Format

Schloss Lab Tools for Reproducible Microbiome Research

Schumaker Shape-Preserving Spline

Standardized Climate Indices Such as SPI, SRI or SPEI

Single-Cell Integrator and Batch Effect Remover

Colour Palettes Based on the Scientific Colour-Maps

Tools Developed by the NCEAS Scientific Computing Support Team

Data Sets from Design and Analysis of Experiments and Observational Studies using R

Highly Customizable 'rmarkdown' Theme for Scientific Reporting

Text & Scientometric Analytics

Visualize 'Reproducibility' and 'Replicability' in a Comparison of Scientific Studies

Extra Recipes Steps for Dealing with Omics Data

A Semi-Supervised Category Identification and Assignment Tool

Interpretation of Heterogeneous Single-Cell Gene Expression Data

Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets

Scientific Graphing Functions for Factorial Designs

Summarize Data for Scientific Publication

Upgraded 'Rmarkdown' Themes for Scientific Writing

Single-Cell Imputation using Subspace Regression

Maximum-Likelihood Perfect Phylogeny Inference at Scale

Provides Some Useful Functions for Making Statistical Tables

Single-Cell Interpretable Tensor Decomposition

SciViews - Main package

Inferring Functional Gene Co-Expression Networks from Single Cell Data

Scaled Logistic Regression

R Toolbox for Unsupervised Spectral Clustering

Single-Case Meta-Analysis

Single Cell Mapper

Fitting Discrete Distribution Models to Count Data

Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'

Spectral Clustering-Based Method for Identifying B Cell Clones

Score Projection Between in 'Vivo' and in 'Vitro' Datasets

Spherically Constrained Optimization Routine

A Package to Score Behavioral Questionnaires